The nucleic acid preparation automated system
The robot (Hamilton Robotics) installed on TWB’s high-throughput microbial strain engineering platform enables the automated preparation of nucleic acids.
The robotic liquid handling platform performs, in a
96-well microplate format, extractions and purifications of nucleic acids from different types of micro-organisms: plasmid DNA, genomic DNA, DNA fragment purification and RNA purification. The system uses both to use
silica gel adsorption techniques and magnetic bead-based immobilization techniques. The manipulation zone is protected by laminar flow (air supply ceiling equipped with a HEPA filter). The robotic platform is equipped with two pipetting tools, one pipetting arm with 8 independent channels and a 96-channel pipetting head both pipetting a volume range of
1µL to 1mL. The configuration of the robot’s deck is designed to
parallelize two 96-well plates: two vacuum stations (filtration on filter plates), two magnetic stands (extractions by immobilization on magnetic beads), two agitators for microplates and two thermostated modules (4-99°C).

Several
additional pieces of equipmentare used for the
quality control of purified nucleic acids:
- A UV-visible micro-volume multi-sample Nanodrop 8000 spectrophotometer for measuring concentrations by measure of absorbance
- A 96-well pre-cast agarose gel electrophoresis system for the quality control of supercoiled DNA
- Two systems of capillary electrophoresis with average throughput (Bioanalyzer Agilent) and high throughput (GXII Perkin Elmer) for the quality control of linear DNA and quality assessment of RNA by RIN (RNA Integrity Number).
This type of robot is commonly used for several types of applications and projects:
- Synthetic biology, genetic and metabolic engineering, strain engineering
- Enzyme evolution
- Protein expression
- DNA libraries construction.
The full implementation of the standard protocols for nucleic acid purification is scheduled for
June 2016. Other protocols can be custom-developed on this station in response to a specific request.
Contact: Hélène Cordier – TWB High throughput strain engineering manager – helene.cordier@insa-toulouse.fr